Characterization of rhizobia from root nodules of Himalayan Common bean accessions along with nif gene expression analysis to formulate bioinoculant for promoting sustainable agriculture in Uttarakhand
Context & Novelty
• First comprehensive effort to isolate and characterize rhizobia from Phaseolus vulgaris L. (common bean) root nodules across diverse altitudinal zones of the Indian Himalaya (Uttarakhand).• Integrates morphological, biochemical, molecular, and functional analyses with nif gene expression profiling to identify efficient strains for nitrogen fixation under cold-adapted, high-altitude conditions.
Expected Outcomes
• Diverse rhizobial strains isolation from common bean root nodules collected across varying altitudes of the Himalayan region.• Morphological, biochemical, and molecular characterization is expected to reveal significant diversity, adaptability, and functional traits of native rhizobia.
• Genetic fingerprinting (BOX-PCR) is anticipated to demonstrate high variability among isolates, with possible correlations between genetic clusters and altitudinal/climatic adaptation.
• Functional screening to confirm key plant growth-promoting traits such as nitrogen fixation, siderophore production, phosphate solubilization, and indole-3-acetic acid (IAA) production, highlighting their contribution to soil fertility and crop performance.
• nifH gene expression analysis for identification of highly efficient strains with superior nitrogenase activity, ensuring better symbiotic efficiency under nitrogen-limiting conditions.
• Promising rhizobial development for carrier-based bioinoculant formulations tailored for Himalayan soils and climates.
• Reduction in dependency on chemical fertilizers.
• Finally contribution towards improved soil health, sustainable agricultural practices, and enhanced livelihoods of farming communities in Uttarakhand.
Impact & Applications
• Provides a baseline understanding of native rhizobial diversity in fragile Himalayan soils and their ecological adaptation to variable altitude, temperature, and nutrient conditions.• Demonstrates the practical applicability of rhizobial bioinoculants for sustainable agriculture, reducing environmental impact and fertilizer dependence.
• Offers direct benefits to farmers and local communities by improving crop productivity, nutritional quality, and socioeconomic resilience in high-altitude regions.
• Contributes to conservation of native microbial resources and advances the integration of molecular tools (nifH expression) with traditional microbiological approaches for strain selection.

Fig. 1: Field sites visit in Chamoli and Pithoragarh district: (A) Malari; (B) Dugtu

Fig. 2: Laboratory analysis of rhizobial colonies isolated root nodules, depicting their (A) morphological; (B) Gram staining reaction; (C) and (D) Biochemical reactions
Contribution in above research work
Institute's Regional Centres-
Garhwal Regional Centre
Institute's Thematic Centres-
CBCM